diff --git a/hmftools.wdl b/hmftools.wdl index ef6355c41dbe93ce11cf7509d16a76ac5afd93c4..6c6ef04545acbc2bb5280223a20fea721dee11c6 100644 --- a/hmftools.wdl +++ b/hmftools.wdl @@ -1226,9 +1226,9 @@ task Sage { File? coverageBed Int threads = 32 - String javaXmx = "120G" - String memory = "121G" - Int timeMinutes = 1 + ceil(size(select_all([tumorBam, referenceBam]), "G") * 9 / threads) + String javaXmx = "8G" + String memory = "9G" + Int timeMinutes = 720 String dockerImage = "quay.io/biocontainers/hmftools-sage:2.8--hdfd78af_1" }