From af550dd024ff6fe5df365ebec58808f8517b2516 Mon Sep 17 00:00:00 2001 From: JasperBoom <jboom@infernum.nl> Date: Wed, 16 Sep 2020 12:11:06 +0200 Subject: [PATCH] Make some outputs optional. --- nanopack.wdl | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/nanopack.wdl b/nanopack.wdl index ba68af1..6860cf1 100644 --- a/nanopack.wdl +++ b/nanopack.wdl @@ -69,13 +69,13 @@ task NanoPlot { output { File dynamicHistogram = outputDir + outputPrefix + "Dynamic_Histogram_Read_length.html" File readLengthHistogram = outputDir + outputPrefix + "HistogramReadlength.png" - File lengthVsQualityScatterPlotDot = outputDir + outputPrefix + "LengthvsQualityScatterPlot_dot.png" - File lengthVsQualityScatterPlotKde = outputDir + outputPrefix + "LengthvsQualityScatterPlot_kde.png" File logScaleReadLengthHistogram = outputDir + outputPrefix + "LogTransformed_HistogramReadlength.png" File report = outputDir + outputPrefix + "NanoPlot-report.html" File weightedHistogram = outputDir + outputPrefix + "Weighted_HistogramReadlength.png" File weightedLogScaleHistogram = outputDir + outputPrefix + "Weighted_LogTransformed_HistogramReadlength.png" File yieldByLength = outputDir + outputPrefix + "Yield_By_Length.png" + File? lengthVsQualityScatterPlotDot = outputDir + outputPrefix + "LengthvsQualityScatterPlot_dot.png" + File? lengthVsQualityScatterPlotKde = outputDir + outputPrefix + "LengthvsQualityScatterPlot_kde.png" File? stats = outputDir + outputPrefix + "NanoStats.txt" } @@ -110,13 +110,13 @@ task NanoPlot { # outputs dynamicHistogram: {description: "Dynamic histogram of read length."} readLengthHistogram: {description: "Histogram of read length."} - lengthVsQualityScatterPlotDot: {description: "Read lengths vs average read quality plot."} - lengthVsQualityScatterPlotKde: {description: "Read lengths vs average read quality plot."} logScaleReadLengthHistogram: {description: "Histogram of read lengths after log transformation."} report: {description: "Html summary report."} weightedHistogram: {description: "Weighted histogram of read lengths."} weightedLogScaleHistogram: {description: "Weighted histogram of read lengths after log transformation."} yieldByLength: {description: "Cumulative yield plot."} + lengthVsQualityScatterPlotDot: {description: "Read lengths vs average read quality plot."} + lengthVsQualityScatterPlotKde: {description: "Read lengths vs average read quality plot."} stats: {description: "NanoStats report."} } } -- GitLab