From adb969eccfaac1cea3240f1952421c649b70816f Mon Sep 17 00:00:00 2001
From: Ruben Vorderman <r.h.p.vorderman@lumc.nl>
Date: Thu, 27 Jun 2019 09:01:40 +0200
Subject: [PATCH] dockerimage htseq collect-collumns
---
collect-columns.wdl | 4 ++--
htseq.wdl | 4 ++--
2 files changed, 4 insertions(+), 4 deletions(-)
diff --git a/collect-columns.wdl b/collect-columns.wdl
index 68c9dcc..9e18f51 100644
--- a/collect-columns.wdl
+++ b/collect-columns.wdl
@@ -13,7 +13,7 @@ task CollectColumns {
File? referenceGtf
String? featureAttribute
- String dockerTag = "0.2.0--py_1"
+ String dockerImage = "quay.io/biocontainers/collect-columns:0.2.0--py_1"
}
command {
@@ -36,6 +36,6 @@ task CollectColumns {
runtime {
memory: 4 + ceil(0.5* length(inputTables))
- docker: "quay.io/biocontainers/collect-columns:" + dockerTag
+ docker: dockerImage
}
}
\ No newline at end of file
diff --git a/htseq.wdl b/htseq.wdl
index a687a8a..ed13167 100644
--- a/htseq.wdl
+++ b/htseq.wdl
@@ -11,7 +11,7 @@ task HTSeqCount {
String stranded = "no"
Int memory = 40
- String dockerTag = "0.9.1--py36h7eb728f_2"
+ String dockerImage = "quay.io/biocontainers/htseq:0.9.1--py36h7eb728f_2"
}
command {
@@ -32,6 +32,6 @@ task HTSeqCount {
runtime {
memory: memory
- docker: "quay.io/biocontainers/htseq:" + dockerTag
+ docker: dockerImage
}
}
\ No newline at end of file
--
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