From abe26c61c29ca9abc1ed8cf8e1ddc54025869e92 Mon Sep 17 00:00:00 2001
From: Ruben Vorderman <r.h.p.vorderman@lumc.nl>
Date: Mon, 1 Jul 2019 16:33:09 +0200
Subject: [PATCH] make sure outputpath exists
---
collect-columns.wdl | 2 ++
1 file changed, 2 insertions(+)
diff --git a/collect-columns.wdl b/collect-columns.wdl
index 9e18f51..910aeac 100644
--- a/collect-columns.wdl
+++ b/collect-columns.wdl
@@ -17,6 +17,8 @@ task CollectColumns {
}
command {
+ set -e
+ mkdir -p $(dirname ~{outputPath})
collect-columns \
~{outputPath} \
~{sep=" " inputTables} \
--
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