From a705eadf22d3858ecee8dce6fe6f498fcef68a99 Mon Sep 17 00:00:00 2001
From: DavyCats <davycats.dc@gmail.com>
Date: Wed, 8 Jan 2020 13:59:40 +0100
Subject: [PATCH] typo
---
picard.wdl | 22 +++++++++++-----------
1 file changed, 11 insertions(+), 11 deletions(-)
diff --git a/picard.wdl b/picard.wdl
index d5daa24..04a7501 100644
--- a/picard.wdl
+++ b/picard.wdl
@@ -31,7 +31,7 @@ task BedToIntervalList {
}
parameter_meta {
- bedfile: {description: "A bed file", category: "required"}
+ bedfile: {description: "A bed file.", category: "required"}
dict: {description: "A sequence dict file.", category: "required"}
outputPath: {description: "The location the output interval list should be written to.",
category: "advanced"}
@@ -147,21 +147,21 @@ task CollectMultipleMetrics {
basename: {description: "The basename/prefix of the output files (may include directories).",
category: "required"}
collectAlignmentSummaryMetrics: {description: "Equivalent to the `PROGRAM=CollectAlignmentSummaryMetrics` argument.",
- category: "common"}
+ category: "advanced"}
collectInsertSizeMetrics: {description: "Equivalent to the `PROGRAM=CollectInsertSizeMetrics` argument.",
- category: "common"}
+ category: "advanced"}
qualityScoreDistribution: {description: "Equivalent to the `PROGRAM=QualityScoreDistribution` argument.",
- category: "common"}
+ category: "advanced"}
meanQualityByCycle: {description: "Equivalent to the `PROGRAM=MeanQualityByCycle` argument.",
- category: "common"}
+ category: "advanced"}
collectBaseDistributionByCycle: {description: "Equivalent to the `PROGRAM=CollectBaseDistributionByCycle` argument.",
- category: "common"}
+ category: "advanced"}
collectGcBiasMetrics: {description: "Equivalent to the `PROGRAM=CollectGcBiasMetrics` argument.",
- category: "common"}
+ category: "advanced"}
collectSequencingArtifactMetrics: {description: "Equivalent to the `PROGRAM=CollectSequencingArtifactMetrics` argument.",
- category: "common"}
+ category: "advanced"}
collectQualityYieldMetrics: {description: "Equivalent to the `PROGRAM=CollectQualityYieldMetrics` argument.",
- category: "common"}
+ category: "advanced"}
memory: {description: "The amount of memory this job will use.", category: "advanced"}
javaXmx: {description: "The maximum memory available to the program. (Should be lower than `memory` to accommodate JVM overhead.",
@@ -210,10 +210,10 @@ task CollectRnaSeqMetrics {
inputBam: {description: "The input BAM file for which metrics will be collected.",
category: "required"}
inputBamIndex: {description: "The index of the input BAM file.", category: "required"}
- refRefflat: {description: "A refflat file containing gene annotations", catehory: "required"}
+ refRefflat: {description: "A refflat file containing gene annotations.", catehory: "required"}
basename: {description: "The basename/prefix of the output files (may include directories).",
category: "required"}
- strandSpecificity: {description: "Equivalent to the `STRAND_SPECIFICITY` option of picard's CollectRnaSeqMetrics",
+ strandSpecificity: {description: "Equivalent to the `STRAND_SPECIFICITY` option of picard's CollectRnaSeqMetrics.",
category: "common"}
memory: {description: "The amount of memory this job will use.", category: "advanced"}
--
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