From a4d2969f20acb2417e485ea31110be1e39774778 Mon Sep 17 00:00:00 2001
From: cedrick <cagaser@outlook.com>
Date: Mon, 10 Feb 2020 15:45:23 +0100
Subject: [PATCH] fix parameter meta
---
delly.wdl | 4 ++--
manta.wdl | 4 ++--
2 files changed, 4 insertions(+), 4 deletions(-)
diff --git a/delly.wdl b/delly.wdl
index 4dffa5f..baaef56 100644
--- a/delly.wdl
+++ b/delly.wdl
@@ -34,8 +34,8 @@ task CallSV {
parameter_meta {
bamFile: {description: "The bam file to process.", category: "required"}
bamIndex: {description: "The index bam file.", category: "required"}
- referenceFasta: referenceFasta: {description: "The reference fasta file also used for mapping.", category: "advanced"}
- referenceFastaFai: { description: "Fasta index (.fai) file of the reference", category: "required" }
+ referenceFasta: {description: "The reference fasta file also used for mapping.", category: "advanced"}
+ referenceFastaFai: {description: "Fasta index (.fai) file of the reference", category: "required" }
outputPath: {description: "The location the output VCF file should be written.", category: "common"}
dockerImage: {description: "The docker image used for this task. Changing this may result in errors which the developers may choose not to address.",
category: "advanced"}
diff --git a/manta.wdl b/manta.wdl
index cd6e0a8..30fc3f7 100644
--- a/manta.wdl
+++ b/manta.wdl
@@ -121,8 +121,8 @@ task Germline {
runDir: {description: "The directory to use as run/output directory.", category: "common"}
bamFile: {description: "The bam file to process.", category: "required"}
bamIndex: {description: "The index bam file.", category: "required"}
- referenceFasta: referenceFasta: {description: "The reference fasta file also used for mapping.", category: "advanced"}
- referenceFastaFai: { description: "Fasta index (.fai) file of the reference", category: "required" }
+ referenceFasta: {description: "The reference fasta file also used for mapping.", category: "advanced"}
+ referenceFastaFai: {description: "Fasta index (.fai) file of the reference", category: "required" }
outputPath: {description: "The location the output VCF file should be written.", category: "common"}
dockerImage: {description: "The docker image used for this task. Changing this may result in errors which the developers may choose not to address.",
category: "advanced"}
--
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