diff --git a/gridss.wdl b/gridss.wdl index 3d4b7d7399c0ae759b8b5efd99bd0b6908450798..4ba4bc17588e754e76de928ec502a5a72343bc1a 100644 --- a/gridss.wdl +++ b/gridss.wdl @@ -33,6 +33,7 @@ task GRIDSS { BwaIndex reference String outputPrefix = "gridss" + String jvmheapsize = "25G" Int threads = 1 String dockerImage = "quay.io/biocontainers/gridss:2.9.4--0" } @@ -45,6 +46,7 @@ task GRIDSS { --output ~{outputPrefix}.vcf.gz \ --assembly ~{outputPrefix}_assembly.bam \ ~{"-t " + threads} \ + ~{"--jvmheap " + jvmheapsize} \ --label ~{normalLabel}~{true="," false="" defined(normalLabel)}~{tumorLabel} \ ~{normalBam} \ ~{tumorBam}