diff --git a/biopet.wdl b/biopet.wdl
index 85fc6ed584b66755f44e789be3bd5a84b28b2888..b110defd1e3167397f3d4d8022f9b697acae92af 100644
--- a/biopet.wdl
+++ b/biopet.wdl
@@ -111,8 +111,8 @@ task ExtractAdaptersFastqc {
     output {
         File adapterOutputFile = adapterOutputFilePath
         File contamsOutputFile = contamsOutputFilePath
-        Array[String] adapterList = read_lines(adapterOutputFilePath)
-        Array[String] contamsList = read_lines(contamsOutputFilePath)
+        Array[String] adapterList = read_lines(adapterOutputFile)
+        Array[String] contamsList = read_lines(contamsOutputFile)
     }
 
     runtime {