diff --git a/bcftools.wdl b/bcftools.wdl index fbc3639dfde586e2239d7bc22548046f7bdd4fbf..7c85c960f1e3bc2d9e312aa5a7bb86d32dedc1d0 100644 --- a/bcftools.wdl +++ b/bcftools.wdl @@ -4,7 +4,6 @@ task Bcf2Vcf { input { File bcf String outputPath - String dockerImage = "quay.io/biocontainers/bcftools:1.9--ha228f0b_3" } @@ -21,4 +20,10 @@ task Bcf2Vcf { runtime { docker: dockerImage } + + parameter_meta { + bcf: {description: "The generated BCF from an SV caller", category: "advanced"} + outputPath: {description: "The location the output VCF file should be written.", category: "common"} + dockerImage: {description: "The docker image used for this task. Changing this may result in errors which the developers may choose not to address.", category: "advanced"} + } } diff --git a/samtools.wdl b/samtools.wdl index ac8fedfef4c3c188ba951663ac527ee73e5873df..a07657b0e8de10e38c8fd2880a72dd31337bc3a5 100644 --- a/samtools.wdl +++ b/samtools.wdl @@ -381,7 +381,6 @@ task FilterShortReadsBam { File bamFile String outputPathBam String outputPathBamIndex - String dockerImage = "quay.io/biocontainers/samtools:1.8--h46bd0b3_5" } @@ -402,4 +401,11 @@ task FilterShortReadsBam { runtime { docker: dockerImage } + + parameter_meta { + bamFile: {description: "The bam file to process.", category: "required"} + outputPathBam: {description: "The filtered bam file.", category: "advanced"} + outputPathBamIndex: {description: "The index of filtered bam file.", category: "advanced"} + dockerImage: {description: "The docker image used for this task. Changing this may result in errors which the developers may choose not to address.", category: "advanced"} + } }