From 9ca13a0a999ff874d041d26c4860c8c07edbe92d Mon Sep 17 00:00:00 2001
From: Ruben Vorderman <r.h.p.vorderman@lumc.nl>
Date: Wed, 9 Mar 2022 10:16:59 +0100
Subject: [PATCH] Remove duplicate options for markduplicates
---
picard.wdl | 2 --
1 file changed, 2 deletions(-)
diff --git a/picard.wdl b/picard.wdl
index eea8d42..3d83582 100644
--- a/picard.wdl
+++ b/picard.wdl
@@ -726,8 +726,6 @@ task MarkDuplicates {
CREATE_INDEX=true \
ADD_PG_TAG_TO_READS=false \
CREATE_MD5_FILE=~{true="true" false="false" createMd5File} \
- USE_JDK_INFLATER=~{true="true" false="false" useJdkInflater} \
- USE_JDK_DEFLATER=~{true="true" false="false" useJdkDeflater}
}
output {
--
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