From 9aa307107f6953e823efcb1059bf62656f96e8e8 Mon Sep 17 00:00:00 2001
From: Ruben Vorderman <r.h.p.vorderman@lumc.nl>
Date: Wed, 9 May 2018 15:55:26 +0200
Subject: [PATCH] solve caching problem in bwa.wdl
---
bwa.wdl | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/bwa.wdl b/bwa.wdl
index e97ae48..440b655 100644
--- a/bwa.wdl
+++ b/bwa.wdl
@@ -2,7 +2,7 @@ task mem {
String? preCommand
File inputR1
File? inputR2
- String referenceFasta
+ File referenceFasta
Array[File] indexFiles # These indexFiles need to be added, otherwise cromwell will not find them.
String outputPath
String? readgroup
--
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