From 93e321eec3c4c22dd2525d25648019ed428eb064 Mon Sep 17 00:00:00 2001
From: DavyCats <davycats.dc@gmail.com>
Date: Tue, 12 Mar 2019 10:31:07 +0100
Subject: [PATCH] memory adjustments
---
mergecounts.wdl | 4 +++-
vardict.wdl | 2 +-
2 files changed, 4 insertions(+), 2 deletions(-)
diff --git a/mergecounts.wdl b/mergecounts.wdl
index 8a20472..dcd76a0 100644
--- a/mergecounts.wdl
+++ b/mergecounts.wdl
@@ -10,6 +10,8 @@ task MergeCounts {
String featureAttribute = "gene_id"
File referenceGtf
Array[String]+? additionalAttributes
+
+ Int? memoryPerSample = 3
}
# Based on a script by Szymon Kielbasa/Ioannis Moustakas
@@ -66,7 +68,7 @@ task MergeCounts {
}
runtime {
- memory: 4 + (2*length(inputFiles))
+ memory: 4 + (memoryPerSample * length(inputFiles))
docker: "biowdl/mergecounts:1.0"
}
}
\ No newline at end of file
diff --git a/vardict.wdl b/vardict.wdl
index e0ce90c..83e697d 100644
--- a/vardict.wdl
+++ b/vardict.wdl
@@ -18,7 +18,7 @@ task VarDict {
Int geneColumn = 4
Int memory = 16
- Float memoryMultiplier = 2.0
+ Float memoryMultiplier = 2.5
String dockerTag = "1.5.8--1"
File? doNotDefineThis #FIXME
--
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