diff --git a/mergecounts.wdl b/mergecounts.wdl index 8a20472d4d6c89544da09b36192bf879383ee8ed..dcd76a06a46d5a951b7f85a7808300f31f9cd33d 100644 --- a/mergecounts.wdl +++ b/mergecounts.wdl @@ -10,6 +10,8 @@ task MergeCounts { String featureAttribute = "gene_id" File referenceGtf Array[String]+? additionalAttributes + + Int? memoryPerSample = 3 } # Based on a script by Szymon Kielbasa/Ioannis Moustakas @@ -66,7 +68,7 @@ task MergeCounts { } runtime { - memory: 4 + (2*length(inputFiles)) + memory: 4 + (memoryPerSample * length(inputFiles)) docker: "biowdl/mergecounts:1.0" } } \ No newline at end of file diff --git a/vardict.wdl b/vardict.wdl index e0ce90c7602130b1923acb5fec0744a4071f6dd0..83e697dc0121537bd6f792626be2f9c277299fcf 100644 --- a/vardict.wdl +++ b/vardict.wdl @@ -18,7 +18,7 @@ task VarDict { Int geneColumn = 4 Int memory = 16 - Float memoryMultiplier = 2.0 + Float memoryMultiplier = 2.5 String dockerTag = "1.5.8--1" File? doNotDefineThis #FIXME