From 9305e435d3c4b07309e4104933fa99d6721b7b2a Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Wed, 20 Jun 2018 20:11:49 +0200
Subject: [PATCH] Add more memory
---
centrifuge.wdl | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/centrifuge.wdl b/centrifuge.wdl
index e950284..f466fe3 100644
--- a/centrifuge.wdl
+++ b/centrifuge.wdl
@@ -86,7 +86,7 @@ task Classify {
mkdir -p ${outputDir}
${preCommand}
centrifuge \
- ${"-p " + threads} \
+ ${"-p " + select_first([threads, 4])} \
${"-x " + indexPrefix} \
${true="-f" false="" fastaInput} \
${true="-k" false="" defined(assignments)} ${assignments} \
@@ -108,8 +108,8 @@ task Classify {
}
runtime {
- cpu: select_first([threads, 1])
- memory: select_first([memory, 4])
+ cpu: select_first([threads, 4])
+ memory: select_first([memory, 8])
}
}
--
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