diff --git a/centrifuge.wdl b/centrifuge.wdl index e950284b5076276bfc6f189ecc2819be1096e665..f466fe3b53c380077fb61cccc12354c2b0cc06a5 100644 --- a/centrifuge.wdl +++ b/centrifuge.wdl @@ -86,7 +86,7 @@ task Classify { mkdir -p ${outputDir} ${preCommand} centrifuge \ - ${"-p " + threads} \ + ${"-p " + select_first([threads, 4])} \ ${"-x " + indexPrefix} \ ${true="-f" false="" fastaInput} \ ${true="-k" false="" defined(assignments)} ${assignments} \ @@ -108,8 +108,8 @@ task Classify { } runtime { - cpu: select_first([threads, 1]) - memory: select_first([memory, 4]) + cpu: select_first([threads, 4]) + memory: select_first([memory, 8]) } }