diff --git a/macs2.wdl b/macs2.wdl index fd7ec02c2819e8f283ca72776299c67ce010b21d..9880c944a6b0942effc88472f64487b165d15d39 100644 --- a/macs2.wdl +++ b/macs2.wdl @@ -5,6 +5,7 @@ task PeakCalling { String sampleName Int? threads Int? memory + Boolean? nomodel command { set -e -o pipefail @@ -12,7 +13,8 @@ task PeakCalling { macs2 callpeak \ --treatment ${sep = ' ' bamFiles} \ --outdir ${outDir} \ - --name ${sampleName} + --name ${sampleName} \ + ${default=false true='--nomodel' false='' nomodel} } output {