diff --git a/spades.wdl b/spades.wdl index 28fd8085d41f2052ca077f17dc59a35a05766755..f0feb573ec4fb71f09ec5cb42f62fe45c4ed7cb8 100644 --- a/spades.wdl +++ b/spades.wdl @@ -28,7 +28,8 @@ task spades { Float? covCutoff Int? phredOffset Int finalThreads = select_first([threads,1]) - Float totalMemory = select_first([memoryGb, finalThreads * 16]) + Float totalMemory = select_first([memoryGb, finalThreads * 16.0]) + Int finalMemory = ceil(totalMemory) Int clusterMemory = ceil(totalMemory / finalThreads) command { @@ -57,7 +58,7 @@ task spades { ${true="--disable-rr" false="" disableRepeatResolution } \ ${"--dataset " + dataset } \ ${"--threads " + finalThreads} \ - ${"--memory " + ceil(totalMemory) } \ + ${"--memory " + finalMemory } \ ${"-k " + k } \ ${"--cov-cutoff " + covCutoff } \ ${"--phred-offset " + phredOffset }