From 8fc0fff11827a9f2efde980d1eaeba0198947d49 Mon Sep 17 00:00:00 2001
From: JasperBoom <jboom@infernum.nl>
Date: Wed, 25 Mar 2020 12:07:02 +0100
Subject: [PATCH] Add missing output to parameter_meta.
---
CHANGELOG.md | 1 +
lima.wdl | 1 +
2 files changed, 2 insertions(+)
diff --git a/CHANGELOG.md b/CHANGELOG.md
index 94fb07f..298b49d 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -10,6 +10,7 @@ that users understand how the changes affect the new version.
-->
Version 3.1.0-dev
---------------------------
++ Lima: Add missing output to parameter_meta.
+ Lima: Remove outputPrefix variable from output section.
+ Isoseq3: Make sure stderr log file from Refine is unique and not overwritten.
+ Isoseq3: Add workaround in Refine for glob command not locating files in output directory.
diff --git a/lima.wdl b/lima.wdl
index 619764f..78bab03 100644
--- a/lima.wdl
+++ b/lima.wdl
@@ -147,6 +147,7 @@ task Lima {
# outputs
outputFLfile: {description: "Demultiplexed reads output file."}
outputFLindexFile: {description: "Index of demultiplexed reads output file."}
+ outputFLxmlFile: {description: "XML file of the subreadset(s)."}
outputSTDERRfile: {description: "Lima STDERR log file."}
outputJSONfile: {description: "Lima JSON file."}
outputCountsFile: {description: "Lima counts file."}
--
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