diff --git a/CHANGELOG.md b/CHANGELOG.md index 94fb07f6f3eb71672da69fbcaced6e5deae18617..298b49dd80dddfd794d5fdfc831a12f43ca9b73b 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -10,6 +10,7 @@ that users understand how the changes affect the new version. --> Version 3.1.0-dev --------------------------- ++ Lima: Add missing output to parameter_meta. + Lima: Remove outputPrefix variable from output section. + Isoseq3: Make sure stderr log file from Refine is unique and not overwritten. + Isoseq3: Add workaround in Refine for glob command not locating files in output directory. diff --git a/lima.wdl b/lima.wdl index 619764fc4e5b408c94f23b73e962c657f8a50564..78bab0324ed3d7d6de58733549dd6c47e8c15eda 100644 --- a/lima.wdl +++ b/lima.wdl @@ -147,6 +147,7 @@ task Lima { # outputs outputFLfile: {description: "Demultiplexed reads output file."} outputFLindexFile: {description: "Index of demultiplexed reads output file."} + outputFLxmlFile: {description: "XML file of the subreadset(s)."} outputSTDERRfile: {description: "Lima STDERR log file."} outputJSONfile: {description: "Lima JSON file."} outputCountsFile: {description: "Lima counts file."}