diff --git a/gatk.wdl b/gatk.wdl index cc8f830f29f16edf74f91df2f5655406ebd855c0..0ab30fc18de79b75e53ece5ba4ae3e768f3436ca 100644 --- a/gatk.wdl +++ b/gatk.wdl @@ -109,7 +109,7 @@ task CombineGVCFs { command { set -e mkdir -p $(dirname ~{outputPath}) - gatk --java-options -Xmx~{javaXmx}G \ + gatk --java-options -Xmx~{javaXmx} \ CombineGVCFs \ -R ~{referenceFasta} \ -O ~{outputPath} \ diff --git a/scripts b/scripts index 73c54827e729279f9833f26dfe8fd5e9848bbd91..aa44abaa6b5d1e1cd0cbe175b4ebc72c7bb1eaa4 160000 --- a/scripts +++ b/scripts @@ -1 +1 @@ -Subproject commit 73c54827e729279f9833f26dfe8fd5e9848bbd91 +Subproject commit aa44abaa6b5d1e1cd0cbe175b4ebc72c7bb1eaa4