diff --git a/gatk.wdl b/gatk.wdl index d4613d9c93d7cbf8df2c69f66d4f6cf2862f28d4..8107d1e40b8c70cfb911125e321f0accc64c38d4 100644 --- a/gatk.wdl +++ b/gatk.wdl @@ -253,6 +253,7 @@ task SplitNCigarReads { String? preCommand File input_bam + File input_bam_index File ref_fasta File ref_fasta_index File ref_dict