From 8e7ca0ce64ef97b3ba7859b245377294754edbd0 Mon Sep 17 00:00:00 2001
From: DavyCats <davycats.dc@gmail.com>
Date: Fri, 1 Jul 2022 14:07:19 +0200
Subject: [PATCH] increase memory for bcftools sort
---
bcftools.wdl | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/bcftools.wdl b/bcftools.wdl
index 589cdde..2bf1c73 100644
--- a/bcftools.wdl
+++ b/bcftools.wdl
@@ -186,7 +186,7 @@ task Sort {
String outputPath = "output.vcf.gz"
String tmpDir = "./sorting-tmp"
- String memory = "256M"
+ String memory = "5G"
Int timeMinutes = 1 + ceil(size(inputFile, "G")) * 5
String dockerImage = "quay.io/biocontainers/bcftools:1.10.2--h4f4756c_2"
}
--
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