From 8d8f5339f4d85c52027cf297d55bde8315625595 Mon Sep 17 00:00:00 2001
From: Ruben Vorderman <r.h.p.vorderman@lumc.nl>
Date: Thu, 21 Feb 2019 10:40:29 +0100
Subject: [PATCH] make outdirpath available
---
biopet/biopet.wdl | 3 ++-
1 file changed, 2 insertions(+), 1 deletion(-)
diff --git a/biopet/biopet.wdl b/biopet/biopet.wdl
index b05bec4..8199958 100644
--- a/biopet/biopet.wdl
+++ b/biopet/biopet.wdl
@@ -248,8 +248,9 @@ task ScatterRegions {
Int memory = 4
Float memoryMultiplier = 3.0
String dockerTag = "0.2--0"
+ String outputDirPath = "scatters"
}
- String outputDirPath = "scatters"
+
command {
set -e -o pipefail
--
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