diff --git a/biopet/biopet.wdl b/biopet/biopet.wdl index b05bec413390a8e2593ffda2e7ebc73bd81e4b54..8199958e1ff7dcad1dc931abbcf5991c86a79070 100644 --- a/biopet/biopet.wdl +++ b/biopet/biopet.wdl @@ -248,8 +248,9 @@ task ScatterRegions { Int memory = 4 Float memoryMultiplier = 3.0 String dockerTag = "0.2--0" + String outputDirPath = "scatters" } - String outputDirPath = "scatters" + command { set -e -o pipefail