From 8ad19fb9389bc0c9f5a29ba47271899e4fade69e Mon Sep 17 00:00:00 2001
From: Ruben Vorderman <r.h.p.vorderman@lumc.nl>
Date: Tue, 19 Feb 2019 16:03:25 +0100
Subject: [PATCH] add multicontainers
---
picard.wdl | 12 ++++++++----
1 file changed, 8 insertions(+), 4 deletions(-)
diff --git a/picard.wdl b/picard.wdl
index 69b87e4..514ec1d 100644
--- a/picard.wdl
+++ b/picard.wdl
@@ -52,7 +52,7 @@ task CollectMultipleMetrics {
Int memory = 4
Float memoryMultiplier = 3.0
- String dockerTag = "2.18.26--0"
+ String dockerTag = "8dde04faba6c9ac93fae7e846af3bafd2c331b3b-0"
}
@@ -98,7 +98,9 @@ task CollectMultipleMetrics {
}
runtime {
- docker: "quay.io/biocontainers/picard:" + dockerTag
+ # https://raw.githubusercontent.com/BioContainers/multi-package-containers/80886dfea00f3cd9e7ae2edf4fc42816a10e5403/combinations/mulled-v2-23d9f7c700e78129a769e78521eb86d6b8341923%3A8dde04faba6c9ac93fae7e846af3bafd2c331b3b-0.tsv
+ # Contains r-base=3.4.1,picard=2.18.2
+ docker: "quay.io/biocontainers/mulled-v2-23d9f7c700e78129a769e78521eb86d6b8341923:" + dockerTag
memory: ceil(memory * memoryMultiplier)
}
}
@@ -112,7 +114,7 @@ task CollectRnaSeqMetrics {
Int memory = 4
Float memoryMultiplier = 3.0
- String dockerTag = "2.18.26--0"
+ String dockerTag = "8dde04faba6c9ac93fae7e846af3bafd2c331b3b-0"
}
@@ -134,7 +136,9 @@ task CollectRnaSeqMetrics {
}
runtime {
- docker: "quay.io/biocontainers/picard:" + dockerTag
+ # https://raw.githubusercontent.com/BioContainers/multi-package-containers/80886dfea00f3cd9e7ae2edf4fc42816a10e5403/combinations/mulled-v2-23d9f7c700e78129a769e78521eb86d6b8341923%3A8dde04faba6c9ac93fae7e846af3bafd2c331b3b-0.tsv
+ # Contains r-base=3.4.1,picard=2.18.2
+ docker: "quay.io/biocontainers/mulled-v2-23d9f7c700e78129a769e78521eb86d6b8341923:" + dockerTag
memory: ceil(memory * memoryMultiplier)
}
}
--
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