From 89a0324ab9467ab79528ce3908701d7b230b2822 Mon Sep 17 00:00:00 2001
From: DavyCats <davycats.dc@gmail.com>
Date: Wed, 19 Jan 2022 12:59:00 +0100
Subject: [PATCH] increase resources GRIDSS
---
gridss.wdl | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gridss.wdl b/gridss.wdl
index b43a383..7d6a1eb 100644
--- a/gridss.wdl
+++ b/gridss.wdl
@@ -93,10 +93,10 @@ task GRIDSS {
File? blacklistBed
File? gridssProperties
- Int jvmHeapSizeGb = 200
+ Int jvmHeapSizeGb = 300
Int nonJvmMemoryGb = 50
Int threads = 4
- Int timeMinutes = ceil(7200 / threads) + 180
+ Int timeMinutes = ceil(7200 / threads) + 1800
String dockerImage = "quay.io/biowdl/gridss:2.12.2"
}
--
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