diff --git a/biowdl.wdl b/biowdl.wdl index 32fd5a735d254f4f1d7bd27b5d676429976a465b..7aa68b271b73ac6c098fe1b0deffa6a06178b4a3 100644 --- a/biowdl.wdl +++ b/biowdl.wdl @@ -52,4 +52,17 @@ task InputConverter { runtime { docker: dockerImage } + + parameter_meta { + samplesheet: {description: "The samplesheet to be processed.", category: "required"} + outputFile: {description: "The location the JSON representation of the samplesheet should be written to.", + category: "advanced"} + skipFileCheck: {description: "Whether or not the existance of the files mentioned in the samplesheet should be checked.", + category: "advanced"} + checkFileMd5sums: {description: "Whether or not the MD5 sums of the files mentioned in the samplesheet should be checked.", + category: "advanced"} + old: {description: "Whether or not the old samplesheet format should be used.", category: "advanced"} + dockerImage: {description: "The docker image used for this task. Changing this may result in errors which the developers may choose not to address.", + category: "advanced"} + } } diff --git a/common.wdl b/common.wdl index f8b2cd8b9dc6aa180c4624927c651fbfea74c851..73325bf4c726f0716b067e6ddc3f7f96b3cb5587 100644 --- a/common.wdl +++ b/common.wdl @@ -184,6 +184,13 @@ task YamlToJson { runtime { docker: dockerImage } + + parameter_meta { + yaml: {description: "The YAML file to convert.", category: "required"} + outputJson: {description: "The location the output JSON file should be written to.", category: "advanced"} + dockerImage: {description: "The docker image used for this task. Changing this may result in errors which the developers may choose not to address.", + category: "advanced"} + } } struct Reference {