From 832a131cee403ec0ac7d983d6e82fd567ce1b246 Mon Sep 17 00:00:00 2001
From: Ruben Vorderman <r.h.p.vorderman@lumc.nl>
Date: Tue, 14 Dec 2021 16:32:30 +0100
Subject: [PATCH] Use mamba-forge and mamba to install dependencies
---
.github/workflows/ci.yml | 3 ++-
1 file changed, 2 insertions(+), 1 deletion(-)
diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index 7856611..66ddb9f 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -23,8 +23,9 @@ jobs:
uses: conda-incubator/setup-miniconda@v2.0.1
with:
channels: conda-forge,bioconda,defaults
+ installer-url: https://github.com/conda-forge/miniforge/releases/download/4.11.0-0/Mambaforge-4.11.0-0-Linux-x86_64.sh
# Conda-incubator uses 'test' environment by default.
- name: install requirements
- run: conda install -n test cromwell miniwdl wdl-aid
+ run: mamba install -n test cromwell miniwdl wdl-aid
- name: run linting
run: bash scripts/biowdl_lint.sh
--
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