From 822e68d987b80781e14685283b8081b7a2e49d37 Mon Sep 17 00:00:00 2001
From: Ruben Vorderman <r.h.p.vorderman@lumc.nl>
Date: Tue, 30 Jun 2020 15:35:15 +0200
Subject: [PATCH] increase time for gatherbam
---
picard.wdl | 3 ++-
1 file changed, 2 insertions(+), 1 deletion(-)
diff --git a/picard.wdl b/picard.wdl
index d778e17..8962c4b 100644
--- a/picard.wdl
+++ b/picard.wdl
@@ -368,7 +368,8 @@ task GatherBamFiles {
Int javaXmxMb = 1024
Int compressionLevel = 1
Boolean createMd5File = false
- Int timeMinutes = 1 + ceil(size(inputBams, "G") * 0.5)
+ # One minute per input gigabyte.
+ Int timeMinutes = 1 + ceil(size(inputBams, "G") * 1)
String dockerImage = "quay.io/biocontainers/picard:2.20.5--0"
}
--
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