From 810228f4bad0b6999818811b6bf3a353bf757f3a Mon Sep 17 00:00:00 2001
From: Ruben Vorderman <r.h.p.vorderman@lumc.nl>
Date: Wed, 20 Feb 2019 16:24:24 +0100
Subject: [PATCH] tabix container for bgzip
---
samtools.wdl | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/samtools.wdl b/samtools.wdl
index 2c0e686..895041c 100644
--- a/samtools.wdl
+++ b/samtools.wdl
@@ -7,7 +7,7 @@ task BgzipAndIndex {
File inputFile
String outputDir
String type = "vcf"
- String dockerTag = "1.8--h46bd0b3_5"
+ String dockerTag = "0.2.6--ha92aebf_0"
}
String outputGz = outputDir + "/" + basename(inputFile) + ".gz"
@@ -23,7 +23,7 @@ task BgzipAndIndex {
}
runtime {
- docker: "quay.io/biocontainers/samtools:" + dockerTag
+ docker: "quay.io/biocontainers/tabix:" + dockerTag
}
}
--
GitLab