diff --git a/CHANGELOG.md b/CHANGELOG.md index 4acadc5703053b97e13fa099779521768f7c742b..4678476f37a0b90bf6573d240ff645145a02c2c0 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -11,11 +11,15 @@ that users understand how the changes affect the new version. version 4.0.0-develop --------------------------- ++ Picard Markduplicates now uses 7G of RAM just like in GATK's best practice + example pipeline. + Picard SortSam added as a task. + Md5 files are no longer created by default on Picard tasks that generate BAM files. -+ Changed PicardMarkduplicates to use COMPRESSION_LEVEL=1 by default - speeding up execution by 2x at the cost of a 20% larger BAM file. ++ Changed PicardMarkduplicates to use COMPRESSION_LEVEL=1 by default with + the htsjdk deflater. + This makes the task finish in 30% less time at the cost of a 6% larger BAM + file. + Added sambamba markdup and sambamba sort. NOTE: samtools sort is more efficient and is recommended. + Correctly represent samtools inconsistent use of the threads flag.