From 7c39cc669b1c1409001f3f4eb2a6b4a65929e07a Mon Sep 17 00:00:00 2001
From: DavyCats <davycats.dc@gmail.com>
Date: Wed, 4 Apr 2018 13:19:28 +0200
Subject: [PATCH] give sampleConfig more memory
---
biopet.wdl | 6 +++++-
1 file changed, 5 insertions(+), 1 deletion(-)
diff --git a/biopet.wdl b/biopet.wdl
index 2868f0c..cb3938d 100644
--- a/biopet.wdl
+++ b/biopet.wdl
@@ -62,7 +62,7 @@ task SampleConfig {
set -e -o pipefail
${preCommand}
mkdir -p . ${"$(dirname " + jsonOutputPath + ")"} ${"$(dirname " + tsvOutputPath + ")"}
- java -Xmx2G -jar ${tool_jar} \
+ java -Xmx4G -jar ${tool_jar} \
-i ${sep="-i " inputFiles} \
${"--sample " + sample} \
${"--library " + library} \
@@ -77,6 +77,10 @@ task SampleConfig {
File? tsvOutput = tsvOutputPath
Object values = if (defined(tsvOutput) && size(tsvOutput) > 0) then read_map(tsvOutput) else { "": "" }
}
+
+ runtime {
+ memory: 6
+ }
}
task BaseCounter {
--
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