From 7a913a265a00ff5790199710b6eddeae59a492cf Mon Sep 17 00:00:00 2001
From: Ruben Vorderman <r.h.p.vorderman@lumc.nl>
Date: Mon, 25 Feb 2019 15:04:49 +0100
Subject: [PATCH] dockerize multiqc
---
multiqc.wdl | 6 +++++-
1 file changed, 5 insertions(+), 1 deletion(-)
diff --git a/multiqc.wdl b/multiqc.wdl
index ef75aaa..55b57cc 100644
--- a/multiqc.wdl
+++ b/multiqc.wdl
@@ -2,7 +2,7 @@ version 1.0
task MultiQC {
input {
- String? preCommand
+ String dockerTag = "1.7--py_1"
File analysisDirectory
Array[File] dependencies # This must be used in order to run multiqc after these tasks.
Boolean force = false
@@ -83,4 +83,8 @@ task MultiQC {
File multiqcReport = outDir + "/" + reportFilename + "_report.html"
File multiqcDataDir = outDir + "/" +reportFilename + "_data"
}
+
+ runtime {
+ docker: "quay.io/biocontainers/multiqc:" + dockerTag
+ }
}
--
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