From 790444da9724ac4c415ff3fbaf698d878805be1a Mon Sep 17 00:00:00 2001
From: JasperBoom <jboom@infernum.nl>
Date: Wed, 29 Jan 2020 11:50:25 +0100
Subject: [PATCH] Update CHANGELOG.
---
CHANGELOG.md | 2 ++
centrifuge.wdl | 2 +-
2 files changed, 3 insertions(+), 1 deletion(-)
diff --git a/CHANGELOG.md b/CHANGELOG.md
index ab2b015..9bea5ba 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -11,6 +11,8 @@ that users understand how the changes affect the new version.
version 2.2.0-dev
---------------------------
++ Update parameter_meta for TALON, Centrifuge and Minimap2.
++ Centrifuge: Fix issue where Centrifuge Inspect did not get the correct index files location.
+ Add `minimumContigLength` input to PlotDenoisedCopyRatios and PlotModeledSegments.
+ Add `commonVariantSitesIndex` input to CollectAllelicCounts
+ Centrifuge: Fix issue where Centrifuge could not locate index files.
diff --git a/centrifuge.wdl b/centrifuge.wdl
index 0d05fee..fc6509b 100644
--- a/centrifuge.wdl
+++ b/centrifuge.wdl
@@ -206,7 +206,7 @@ task Inspect {
parameter_meta {
# inputs
printOption: {description: "The output option for inspect (fasta, summary, conversionTable, taxonomyTree, nameTable, sizeTable)", category: "required"}
- indexBasename: {description: "The basename of the index to be inspected.", category: "required"}
+ indexFiles: {description: "The files of the index for the reference genomes.", category: "required"}
outputPrefix: {description: "Output directory path + output file prefix.", category: "required"}
across: {description: "When printing FASTA output, output a newline character every <int> bases.", category: "common"}
memory: {description: "The amount of memory available to the job.", category: "advanced"}
--
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