diff --git a/CHANGELOG.md b/CHANGELOG.md index ab2b0150deb662dab59bb7bab14cb2d009965e5b..9bea5ba9bd6d5af5572927f83e7c4463a0c15d85 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -11,6 +11,8 @@ that users understand how the changes affect the new version. version 2.2.0-dev --------------------------- ++ Update parameter_meta for TALON, Centrifuge and Minimap2. ++ Centrifuge: Fix issue where Centrifuge Inspect did not get the correct index files location. + Add `minimumContigLength` input to PlotDenoisedCopyRatios and PlotModeledSegments. + Add `commonVariantSitesIndex` input to CollectAllelicCounts + Centrifuge: Fix issue where Centrifuge could not locate index files. diff --git a/centrifuge.wdl b/centrifuge.wdl index 0d05fee4f281bb3d6edfcc165c93654366595977..fc6509b315a8e588309ca140a18edb4f646bb276 100644 --- a/centrifuge.wdl +++ b/centrifuge.wdl @@ -206,7 +206,7 @@ task Inspect { parameter_meta { # inputs printOption: {description: "The output option for inspect (fasta, summary, conversionTable, taxonomyTree, nameTable, sizeTable)", category: "required"} - indexBasename: {description: "The basename of the index to be inspected.", category: "required"} + indexFiles: {description: "The files of the index for the reference genomes.", category: "required"} outputPrefix: {description: "Output directory path + output file prefix.", category: "required"} across: {description: "When printing FASTA output, output a newline character every <int> bases.", category: "common"} memory: {description: "The amount of memory available to the job.", category: "advanced"}