From 76b878e3fd9173eca3a543f23ef92e486dd95cd3 Mon Sep 17 00:00:00 2001
From: Ruben Vorderman <r.h.p.vorderman@lumc.nl>
Date: Tue, 1 Oct 2019 16:05:23 +0200
Subject: [PATCH] replace custom container with biocontainer
---
common.wdl | 3 ++-
1 file changed, 2 insertions(+), 1 deletion(-)
diff --git a/common.wdl b/common.wdl
index fdc6d18..8d3097d 100644
--- a/common.wdl
+++ b/common.wdl
@@ -161,7 +161,8 @@ task YamlToJson {
input {
File yaml
String outputJson = basename(yaml, "\.ya?ml$") + ".json"
- String dockerImage = "biowdl/pyyaml:3.13-py37-slim"
+ # biowdl-input-converter has python and pyyaml.
+ String dockerImage = "quay.io/biocontainers/biowdl-input-converter:0.1.0--py_0"
}
command {
set -e
--
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