diff --git a/samtools.wdl b/samtools.wdl index 9198119af11f962523debdf0105f1731e0cca4ff..20f7ef0a04ab5baa074c633cfa2ca58ba7f9386c 100644 --- a/samtools.wdl +++ b/samtools.wdl @@ -211,7 +211,7 @@ task Sort { parameter_meta { # inputs - inputFile: {description: "The input SAM file.", category: "required"} + inputBam: {description: "The input SAM file.", category: "required"} outputPrefix: {description: "Output directory path + output file prefix.", category: "required"} sortByName: {description: "Sort the inputBam by read name instead of position.", category: "advanced"} cores: {description: "The number of cores to be used.", category: "advanced"} @@ -219,7 +219,7 @@ task Sort { dockerImage: {description: "The docker image used for this task. Changing this may result in errors which the developers may choose not to address.", category: "advanced"} # outputs - outputSortedBAM: {description: "Sorted BAM file."} + outputSortedBam: {description: "Sorted BAM file."} } }