From 73867fd5b045fdd1068f3b968a5e5927ee5a86ef Mon Sep 17 00:00:00 2001
From: Ruben Vorderman <r.h.p.vorderman@lumc.nl>
Date: Mon, 11 May 2020 11:27:09 +0200
Subject: [PATCH] Record change in changelog

---
 CHANGELOG.md | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/CHANGELOG.md b/CHANGELOG.md
index e4dea7c..153fa69 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -11,6 +11,9 @@ that users understand how the changes affect the new version.
 
 version 3.2.0-develop
 ---------------------------
++ GATK.HaplotypeCaller: Add `--dont-use-soft-clipped-bases` and 
+  `--standard-min-confidence-threshold-for-calling` options. These are 
+  required for RNA seq variant calling according to GATK best practices.
 + Samtools: Fix quotations in sort command.
 + Samtools SortByName is now called Sort.
 + Generalize sort task to now also sort by position, instead of just read name.
-- 
GitLab