diff --git a/gatk.wdl b/gatk.wdl index 3b07d9be084dad51509bab30520eb810b7905ce0..160849ad00e3d849bfb26a44ce717b73e2c4918f 100644 --- a/gatk.wdl +++ b/gatk.wdl @@ -268,6 +268,7 @@ task SplitNCigarReads { set -e -o pipefail ${preCommand} java -Xms${mem}G -jar ${gatk_jar} \ + SplitNCigarReads \ -I ${input_bam} \ -R ${ref_fasta} \ -O ${output_bam} # might have to be -o depending on GATK version \