From 66793bbfde09afcef9b4c98fe842637d98a72d5d Mon Sep 17 00:00:00 2001
From: cagaser <c.agaser@lumc.nl>
Date: Fri, 7 Feb 2020 15:40:31 +0100
Subject: [PATCH] small fix
---
delly.wdl | 4 ++--
manta.wdl | 2 +-
survivor.wdl | 2 +-
3 files changed, 4 insertions(+), 4 deletions(-)
diff --git a/delly.wdl b/delly.wdl
index f97d905..9a47e34 100644
--- a/delly.wdl
+++ b/delly.wdl
@@ -9,7 +9,7 @@ task CallSV {
File referenceFasta
File referenceFastaFai
String outputPath
- Int mem = 15
+ String memory = 15
String dockerImage = "quay.io/biocontainers/delly:0.8.1--h4037b6b_1"
}
@@ -28,6 +28,6 @@ task CallSV {
runtime {
docker: dockerImage
- memory: mem
+ memory: memory
}
}
diff --git a/manta.wdl b/manta.wdl
index 47f7ace..3dd8703 100644
--- a/manta.wdl
+++ b/manta.wdl
@@ -71,7 +71,7 @@ task Germline {
Boolean exome = false
Int cores = 1
- Int memory = 4
+ String memory = 4
}
command {
diff --git a/survivor.wdl b/survivor.wdl
index 9f0ea39..0ff513b 100644
--- a/survivor.wdl
+++ b/survivor.wdl
@@ -14,7 +14,7 @@ task Merge {
Int minSize = 30
String sample
String outputPath
- Int memory = 128
+ String memory = 128
}
command {
--
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