diff --git a/delly.wdl b/delly.wdl index f97d9056dc7049e6895bc0da4d3c3907a70d7781..9a47e34e4203a282bad0d35ef6c6fa374ce7e532 100644 --- a/delly.wdl +++ b/delly.wdl @@ -9,7 +9,7 @@ task CallSV { File referenceFasta File referenceFastaFai String outputPath - Int mem = 15 + String memory = 15 String dockerImage = "quay.io/biocontainers/delly:0.8.1--h4037b6b_1" } @@ -28,6 +28,6 @@ task CallSV { runtime { docker: dockerImage - memory: mem + memory: memory } } diff --git a/manta.wdl b/manta.wdl index 47f7ace1699ecaea733c06fcd87a86d7cfb45524..3dd8703d0dd4b8a9ba8586db22c57411e3d85cec 100644 --- a/manta.wdl +++ b/manta.wdl @@ -71,7 +71,7 @@ task Germline { Boolean exome = false Int cores = 1 - Int memory = 4 + String memory = 4 } command { diff --git a/survivor.wdl b/survivor.wdl index 9f0ea39bdc860d40f5488deb204fc2544a40e0d4..0ff513b3b47ce38699d8997e3e5add9ad11cdb5f 100644 --- a/survivor.wdl +++ b/survivor.wdl @@ -14,7 +14,7 @@ task Merge { Int minSize = 30 String sample String outputPath - Int memory = 128 + String memory = 128 } command {