From 66399ba333105934575da4ff97e43f6e35ef06d4 Mon Sep 17 00:00:00 2001
From: DavyCats <davycats.dc@gmail.com>
Date: Mon, 5 Oct 2020 13:07:13 +0200
Subject: [PATCH] fix whitespace
---
bcftools.wdl | 8 ++++----
1 file changed, 4 insertions(+), 4 deletions(-)
diff --git a/bcftools.wdl b/bcftools.wdl
index b1d6e5f..619c173 100644
--- a/bcftools.wdl
+++ b/bcftools.wdl
@@ -141,11 +141,11 @@ task Filter {
set -e
mkdir -p "$(dirname ~{outputPath})"
bcftools \
- filter \
+ filter \
~{true="-i" false="" length(include) > 0} ~{sep=" -i " include} \
- ~{vcf} \
- -O z \
- -o ~{outputPath}
+ ~{vcf} \
+ -O z \
+ -o ~{outputPath}
bctools index --tbi ~{outputPath}
}
--
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