diff --git a/bcftools.wdl b/bcftools.wdl index b1d6e5f0061ecb5fe09a4779533711e8f17b7a3f..619c1733051425b4e82e658cac73c0385c4ea619 100644 --- a/bcftools.wdl +++ b/bcftools.wdl @@ -141,11 +141,11 @@ task Filter { set -e mkdir -p "$(dirname ~{outputPath})" bcftools \ - filter \ + filter \ ~{true="-i" false="" length(include) > 0} ~{sep=" -i " include} \ - ~{vcf} \ - -O z \ - -o ~{outputPath} + ~{vcf} \ + -O z \ + -o ~{outputPath} bctools index --tbi ~{outputPath} }