diff --git a/bcftools.wdl b/bcftools.wdl index e60142dbca948a9e3d69ee0f502c1fa67ae9de44..b99a8cf581517272beeb174dace0c2ed7587f4ce 100644 --- a/bcftools.wdl +++ b/bcftools.wdl @@ -37,9 +37,9 @@ task View { set -e mkdir -p "$(dirname ~{outputPath})" bcftools view \ - ~{inputFile} -o ~{outputPath} \ + -o ~{outputPath} \ -O ~{outputType} \ - -l ~{compressionLevel} + -l ~{compressionLevel} \ ~{inputFile} bcftools index --tbi ~{outputPath}