From 62a1b319d8daa766b5df33a73f00cd27638f83ab Mon Sep 17 00:00:00 2001
From: DavyCats <davycats.dc@gmail.com>
Date: Fri, 13 Sep 2019 12:52:23 +0200
Subject: [PATCH] small style changes
---
CPAT.wdl | 2 +-
collect-columns.wdl | 2 +-
somaticseq.wdl | 2 +-
3 files changed, 3 insertions(+), 3 deletions(-)
diff --git a/CPAT.wdl b/CPAT.wdl
index b92053d..53aeac9 100644
--- a/CPAT.wdl
+++ b/CPAT.wdl
@@ -30,7 +30,7 @@ task CPAT {
}
output {
- File outFile=outFilePath
+ File outFile = outFilePath
}
runtime {
diff --git a/collect-columns.wdl b/collect-columns.wdl
index 910aeac..edd6743 100644
--- a/collect-columns.wdl
+++ b/collect-columns.wdl
@@ -37,7 +37,7 @@ task CollectColumns {
}
runtime {
- memory: 4 + ceil(0.5* length(inputTables))
+ memory: 4 + ceil(0.5 * length(inputTables))
docker: dockerImage
}
}
\ No newline at end of file
diff --git a/somaticseq.wdl b/somaticseq.wdl
index 7a25a08..4501525 100644
--- a/somaticseq.wdl
+++ b/somaticseq.wdl
@@ -273,7 +273,7 @@ task ModifyStrelka {
String installDir = "/opt/somaticseq/vcfModifier" #the location in the docker image
File strelkaVCF
- String? outputVCFName = basename(strelkaVCF, ".gz")
+ String outputVCFName = basename(strelkaVCF, ".gz")
Int threads = 1
String dockerImage = "lethalfang/somaticseq:3.1.0"
--
GitLab