From 5a4a9d15707b5d72193302ff378260396fd40e53 Mon Sep 17 00:00:00 2001
From: DavyCats <davycats.dc@gmail.com>
Date: Tue, 9 Oct 2018 09:59:37 +0200
Subject: [PATCH] fix casecontrol command
---
biopet/sampleconfig.wdl | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/biopet/sampleconfig.wdl b/biopet/sampleconfig.wdl
index 9c15252..321b77c 100644
--- a/biopet/sampleconfig.wdl
+++ b/biopet/sampleconfig.wdl
@@ -103,8 +103,8 @@ task CaseControl {
~{preCommand}
mkdir -p $(dirname ~{outputPath})
~{toolCommand} CaseControl \
- -i ~{sep="-i " inputFiles} \
- -s ~{sep="-s " sampleConfigs} \
+ -i ~{sep=" -i " inputFiles} \
+ -s ~{sep=" -s " sampleConfigs} \
~{"-o " + outputPath} \
~{"--controlTag " + controlTag}
}
--
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