diff --git a/biopet.wdl b/biopet.wdl index a1bf3d72bba36e9fae5749170b5fb6325ead32b5..ec29318278fb7c85796c4bea62541b437b127848 100644 --- a/biopet.wdl +++ b/biopet.wdl @@ -355,7 +355,7 @@ task ValidateFastq { command { set -e -o pipefail ${preCommand} - ${toolCommand}\ + ${toolCommand} \ --fastq1 ${fastq1} \ ${"--fastq2 " + fastq2} } @@ -386,7 +386,7 @@ task ValidateVcf { command { set -e -o pipefail ${preCommand} - ${toolCommand}\ + ${toolCommand} \ -i ${vcfFile} \ -R ${refFasta} }