diff --git a/peach.wdl b/peach.wdl index bd8375d7215b3d7268358505ce23b6d5bdb1d904..d1bc17f8cf860a8f7de0b547b4533bd95eee6e38 100644 --- a/peach.wdl +++ b/peach.wdl @@ -38,11 +38,11 @@ task Peach { set -e mkdir -p ~{outputDir} peach \ - -vcf ~{germlineVcf} \ + --vcf ~{germlineVcf} \ --sample_t_id ~{tumorName} \ --sample_r_id ~{normalName} \ --tool_version 1.5 \ - --outputDir ~{outputDir} \ + --outputdir ~{outputDir} \ --panel ~{panelJson} }