From 548cbce27db95753767ab5b556b215a4c44c260c Mon Sep 17 00:00:00 2001
From: Ruben Vorderman <r.h.p.vorderman@lumc.nl>
Date: Thu, 22 Feb 2018 14:16:27 +0100
Subject: [PATCH] better memory management in spades
---
spades.wdl | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/spades.wdl b/spades.wdl
index 5a8ab28..408ea08 100644
--- a/spades.wdl
+++ b/spades.wdl
@@ -56,7 +56,7 @@ task spades {
${true="--disable-rr" false="" disableRepeatResolution } \
${"--dataset " + dataset } \
${"--threads " + threads } \
- ${"--memory " + memoryGb } \
+ ${"--memory " + memoryGb * threads } \
${"-k " + k } \
${"--cov-cutoff " + covCutoff } \
${"--phred-offset " + phredOffset }
--
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