diff --git a/gatk.wdl b/gatk.wdl index 0d36e440981fa853df575b20a2258259bde06d86..939513db6a92d2f4b4fda5fdf22c26a079be68f0 100644 --- a/gatk.wdl +++ b/gatk.wdl @@ -734,7 +734,7 @@ task GatherBqsrReports { command { set -e mkdir -p "$(dirname ~{outputReportPath})" - gatk --java-options '-Xmx~{javaXmxMb} -XX:ParallelGCThreads=1' \ + gatk --java-options '-Xmx~{javaXmxMb}M -XX:ParallelGCThreads=1' \ GatherBQSRReports \ -I ~{sep=' -I ' inputBQSRreports} \ -O ~{outputReportPath}